PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC206951.3_FGP016
Common NameLOC100502296
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 271aa    MW: 28943 Da    PI: 4.5928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC206951.3_FGP016genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-1777126255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y GVr+++ +g+W+Ae+rdp+    r  r++lg+f tae Aa+a+++a++ l+g
  AC206951.3_FGP016  77 PYYGVRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDHAARDLRG 126
                        688******.**********63....56************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-2176135IPR016177DNA-binding domain
PROSITE profilePS5103223.31477134IPR001471AP2/ERF domain
SMARTSM003805.8E-3177140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3078135IPR001471AP2/ERF domain
CDDcd000187.46E-1578134No hitNo description
PfamPF008472.9E-1178126IPR001471AP2/ERF domain
PRINTSPR003675.0E-107889IPR001471AP2/ERF domain
PRINTSPR003675.0E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRGV TPGHGSGGKG RTAANDDDDF EAAFRDFDED SEEEPVGAIT  60
KKAFGFAGTR RRRPSSPYYG VRRRPWGKWA AEVRDPVRGV RVWLGTFATA EAAARAYDHA  120
ARDLRGATAR LNFPSNSKRR SAVAKAAPRV DEDEDEDENG GGGALPDRSC QGMSAVGLCV  180
ELGGASKRAR TEPQEEAQGR EKKVAPALAP SDDSADTLLM DAFMFGDPFS FFDGGLCYEP  240
AVTMDCQLLG GDAVFCDDSV GLWSFDDSVC F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1878134663ATERF1
3gcc_A9e-1878134663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC206951.3_FG016
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC206951.3_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876880.0BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183703.10.0putative AP2/EREBP transcription factor superfamily protein
TrEMBLC4JA410.0C4JA41_MAIZE; Uncharacterized protein
TrEMBLK4JE630.0K4JE63_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGAC206951.3_FGP0160.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.39e-24ERF family protein